Note this pseudo example only has one clone with a purity ~0.15）（Please make sure t1.tsv is under your current directory. (If purity is unavailable, input 'None' at the position of, and FastClone will infer purity automatically)Ī pseudo example to load samples from P圜lone format files and infer (t1.tsv is included in this repository): fastclone load-pyclone prop t1.tsv 0.8 solve. The general format of command line for reading P圜lone format files: fastclone load-pyclone prop solve pip install fastclone-guanlabįastClone accepts either MuTect VCF + Battenberg format (specified in the DREAM You also can directly pip install FastClone with the command below.

(Please make sure you have the slash at the end, which forces pip to install from local directory, otherwise it will run into error) To install the package using Pip, git clone InstallationįastClone needs Python 3.5 or later version.

Mutation Calling - Heterogeneity Challenge. The algorithm won the first place in DREAM Somatic Mutation frequencies and copy number data, FastClone infers subclonalĬomposition and phylogeny. FastClone is a fast algorithm to infer tumour heterogeneity.

Fastcopy command line examples